Usage

Installation

conda install -c lescailab nanocdr-x

Commands

predict_cdrs

predict_cdrs \
  -i path/to/input.csv \
  -o path/to/output_cdrs.csv

• -i/--input: CSV with columns identifier,input.
• -o/--output: Path to write identifier,predicted_cdr1,predicted_cdr2,predicted_cdr3.

explain_hidden_states

explain_hidden_states \
  -i path/to/input.csv \
  -o path/to/hidden_states.csv

Outputs a table with one row per non‑pad token, including:

• sequence_id
• position
• token
• pred_class
• hs_dim_0…hs_dim_N

explain_saliency

explain_saliency \
  -i path/to/input.csv \
  -o path/to/saliency.csv

Outputs a detailed saliency map with columns:

• sequence_id
• time_point
• position
• predicted_class
• saliency